Package: SDALGCP2
Title: Discrete Log-Gaussian Cox Processes for Aggregated Counts
Version: 0.1.1
Authors@R: c(
    person("Olatunji", "Johnson", email = "olatunjijohnson21111@gmail.com", role = c("aut", "cre")),
    person("Emanuele", "Giorgi", role = "aut"),
    person("Peter", "Diggle", role = "aut"))
Description: Fits a spatially discrete approximation to a log-Gaussian
        Cox process model for spatially aggregated disease count data,
        estimated by Monte Carlo Maximum Likelihood as in Christensen
        (2004) <doi:10.1198/106186004X2525> and Johnson, Diggle and
        Giorgi (2019) <doi:10.1002/sim.8339>. Performance-critical
        steps (aggregated correlation assembly, Metropolis-adjusted
        Langevin algorithm (MALA) sampling, the Monte Carlo likelihood,
        and the Kronecker-structured space-time likelihood) are
        implemented in C++ via 'RcppArmadillo'. Provides a one-line,
        'glm'-like interface and statistical extensions including a
        nugget term, general 'Matern' smoothness, raster and misaligned
        covariates, restricted spatial regression, importance-sampling
        diagnostics and re-anchored Monte Carlo maximum likelihood
        (MCML).
Depends: R (>= 4.2.0)
License: GPL-2 | GPL-3
Encoding: UTF-8
Language: en-GB
LazyData: true
LinkingTo: Rcpp, RcppArmadillo
Imports: Rcpp, sf, terra, spatstat.geom, spatstat.random, ggplot2,
        progress, stats, utils
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), numDeriv, bench
VignetteBuilder: knitr
Config/testthat/edition: 3
RoxygenNote: 7.3.1
URL: https://github.com/olatunjijohnson/SDALGCP2,
        https://olatunjijohnson.github.io/SDALGCP2/
BugReports: https://github.com/olatunjijohnson/SDALGCP2/issues
Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev
        libssl-dev libproj-dev libsqlite3-dev libudunits2-dev
Repository: https://olatunjijohnson.r-universe.dev
Date/Publication: 2026-07-02 20:45:05 UTC
RemoteUrl: https://github.com/olatunjijohnson/sdalgcp2
RemoteRef: HEAD
RemoteSha: 70d0bd499f613529a3d9c7280d9064f00a2532f1
NeedsCompilation: yes
Packaged: 2026-07-03 07:50:22 UTC; root
Author: Olatunji Johnson [aut, cre],
  Emanuele Giorgi [aut],
  Peter Diggle [aut]
Maintainer: Olatunji Johnson <olatunjijohnson21111@gmail.com>