{ "_id": "6abcc2aa99f7aa8c6aa4b5b8", "Package": "lsda", "Type": "Package", "Title": "Course Materials for Longitudinal and Spatial Data Analysis", "Version": "0.2.0", "Authors@R": "person(\ngiven = \"Olatunji\",\nfamily = \"Johnson\",\nrole = c(\"aut\", \"cre\"),\nemail = \"olatunji.johnson@manchester.ac.uk\")", "Description": "Datasets, teaching helper functions, interactive Shiny\napplications and 'learnr' tutorials supporting MATH48132 and\nMATH68132 Longitudinal and Spatial Data Analysis at the\nUniversity of Manchester. Installing this package provides\nevery dataset and dependency used across the eleven teaching\nweeks in a single step, so that tutorial code runs without\nstudents having to locate and read data files themselves.", "License": "CC BY-NC-SA 4.0", "Encoding": "UTF-8", "LazyData": "true", "Config/testthat/edition": "3", "RoxygenNote": "7.3.1", "URL": "https://github.com/olatunjijohnson/lsda", "BugReports": "https://github.com/olatunjijohnson/lsda/issues", "Repository": "https://olatunjijohnson.r-universe.dev", "Date/Publication": "2026-09-30 04:59:32 UTC", "RemoteUrl": "https://github.com/olatunjijohnson/lsda", "RemoteRef": "HEAD", "RemoteSha": "33ac5ded60d7598854f0bd5969362bba94555b1c", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-30 07:36:03 UTC", "User": "root" }, "Author": "Olatunji Johnson [aut, cre]", "Maintainer": "Olatunji Johnson ", "_user": "olatunjijohnson", "_type": "src", "_file": "lsda_0.2.0.tar.gz", "_fileid": "https://r2.ropensci.org/143ca52f594d6c09915358f0eafa26004f2d264e31b47743f8e4bf6a5bf3a8eb", "_filesize": 1337190, "_sha256": "143ca52f594d6c09915358f0eafa26004f2d264e31b47743f8e4bf6a5bf3a8eb", "_expires": "2027-01-08T08:04:55.000Z", "_created": "2026-09-30T07:36:03.000Z", "_published": "2026-09-30T08:04:58.095Z", "_jobs": [ { "job": 109787622660, "time": 148, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11082779113" }, { "job": 109787622759, "time": 163, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11083108805" }, { "job": 109787622739, "time": 185, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11084091289" }, { "job": 109787622732, "time": 152, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11084171550" }, { "job": 109786333154, "time": 248, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11083501344" }, { "job": 109787623050, "time": 154, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11083721102" }, { "job": 109787622832, "time": 94, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11083113735" }, { "job": 109787622834, "time": 78, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11083172121" }, { "job": 109787622925, "time": 91, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11083765576" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/olatunjijohnson/actions/runs/36684215744", "_status": "success", "_upstream": "https://github.com/olatunjijohnson/lsda", "_commit": { "id": "33ac5ded60d7598854f0bd5969362bba94555b1c", "author": "olatunjijohnson ", "committer": "olatunjijohnson ", "message": "lsda 0.2.0: Greater Manchester NO2 and North West obesity data\n\nAdds the three datasets the week 7-10 lecture slides now load directly:\n\n- gm_no2 NO2 at 25 Greater Manchester monitoring stations (sf)\n- gm_grid 4996-point prediction grid with the same covariates (sf)\n- nw_obesity child obesity and IDACI for 33 NW England districts (sf)\n\nUntil now those examples read local CSV and shapefiles that only existed on\nthe lecturer's machine, so the code on the slides could not be run.\n\nDocumentation:\n\n- galicia, loaloa and liberia gain a \"Name clash\" section. RiskMap ships\n datasets under all three names -- its galicia has only x, y and lead, its\n loaloa uses upper-case columns, and its liberia is a different study\n altogether -- and the week 7 and 8 tutorials attach both packages, so a\n bare data(galicia) can silently load the wrong one.\n\n- The README's advice on poly2nb(snap =) was wrong and is replaced. It\n recommended snap = 200000 for scotland_lip; measured, that takes the mean\n number of neighbours from 4.2 to 46.6 out of a possible 55 and collapses\n Moran's I on the SIRs from 0.44 to 0.05. The islands should keep their\n empty neighbour sets or be joined to the nearest county instead.\n\nR CMD check: OK, no errors, warnings or notes.\n", "time": 1790744372 }, "_maintainer": { "name": "Olatunji Johnson", "email": "olatunji.johnson@manchester.ac.uk", "login": "olatunjijohnson", "description": "Lecturer in Statistics at the University of Manchester", "uuid": 27777013 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1", "role": "Depends" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "CARBayes", "role": "Suggests" }, { "package": "geepack", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "gstat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "learnr", "role": "Suggests" }, { "package": "MASS", "role": "Suggests" }, { "package": "nlme", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "sf", "role": "Suggests" }, { "package": "shiny", "role": "Suggests" }, { "package": "spatstat", "role": "Suggests" }, { "package": "spdep", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "olatunjijohnson", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-32", "n": 1 }, { "week": "2026-40", "n": 1 } ], "_tags": [], "_stars": 0, "_contributors": [ { "user": "olatunjijohnson", "count": 2, "uuid": 27777013 } ], "_userbio": { "uuid": 27777013, "type": "user", "name": "Olatunji Olugoke Johnson", "followers": 13, "description": "Lecturer in Statistics at the University of Manchester" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/lsda" }, "_devurl": "https://github.com/olatunjijohnson/lsda", "_searchresults": 5, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/lsda.html", "extra/manual.pdf", "extra/readme.html", "extra/readme.md" ], "_cranurl": false, "_exports": [ "cov_structure", "emp_variogram_mc", "run_app", "sir", "spaghetti_plot" ], "_datasets": [ { "name": "cattle", "title": "Cattle bodyweight data", "object": "cattle", "class": [ "data.frame" ], "fields": [ "group", "t1", "t2", "t3", "t4", "t5", "t6", "t7", "t8", "t9", "t10", "t11" ], "rows": 60, "table": true, "tojson": true }, { "name": "cd4", "title": "CD4+ cell counts in HIV seroconverters", "object": "cd4", "class": [ "data.frame" ], "fields": [ "time", "cd4", "age", "cig", "drug", "partner", "cesd", "subject" ], "rows": 2376, "table": true, "tojson": true }, { "name": "fev1", "title": "Lung function growth in Topeka schoolgirls (FEV1)", "object": "fev1", "class": [ "data.frame" ], "fields": [ "id", "ht", "age", "baseht", "baseage", "logfev1", "fev1", "logfev1_ht" ], "rows": 1993, "table": true, "tojson": true }, { "name": "galicia", "title": "Lead concentration in moss samples, Galicia", "object": "galicia", "class": [ "data.frame" ], "fields": [ "lead", "loglead", "long", "lat", "pm10" ], "rows": 132, "table": true, "tojson": true }, { "name": "galicia_grid", "title": "Prediction grid for Galicia", "object": "galicia_grid", "class": [ "data.frame" ], "fields": [ "X", "Y" ], "rows": 1508, "table": true, "tojson": true }, { "name": "galicia_pred", "title": "Covariate surface for Galicia prediction", "object": "galicia_pred", "class": [ "data.frame" ], "fields": [ "pm10", "long", "lat" ], "rows": 1508, "table": true, "tojson": true }, { "name": "gm_grid", "title": "Prediction grid for Greater Manchester", "object": "gm_grid", "class": [ "sf", "data.frame" ], "fields": [ "elevation", "pop", "road", "geometry" ], "rows": 4996, "table": true, "tojson": true }, { "name": "gm_no2", "title": "Nitrogen dioxide in Greater Manchester", "object": "gm_no2", "class": [ "sf", "data.frame" ], "fields": [ "station", "NO2", "PM10", "PM25", "elevation", "road", "pop", "geometry" ], "rows": 25, "table": true, "tojson": true }, { "name": "ichs", "title": "Indonesian Children's Health Study (ICHS)", "object": "ichs", "class": [ "data.frame" ], "fields": [ "id", "infection", "time", "gender", "vitA", "age" ], "rows": 1500, "table": true, "tojson": true }, { "name": "liberia", "title": "Malaria incidence and child growth in Liberia", "object": "liberia", "class": [ "data.frame" ], "fields": [ "cluster", "height_for_age_zscores", "longitude", "latitude", "malaria_incidence_rate" ], "rows": 267, "table": true, "tojson": true }, { "name": "liberia_grid", "title": "Prediction grid for Liberia", "object": "liberia_grid", "class": [ "data.frame" ], "fields": [ "X", "Y" ], "rows": 3837, "table": true, "tojson": true }, { "name": "loaloa", "title": "Loa loa prevalence in Cameroon and Nigeria", "object": "loaloa", "class": [ "data.frame" ], "fields": [ "row", "villcode", "longitude", "latitude", "no_exam", "no_inf", "elevation", "mean9901", "max9901", "min9901", "stdev9901" ], "rows": 197, "table": true, "tojson": true }, { "name": "nw_obesity", "title": "Childhood obesity and deprivation in North West England", "object": "nw_obesity", "class": [ "sf", "data.frame" ], "fields": [ "lad_code", "lad_name", "num_obese", "total_sampled", "prop_obese", "idaci_score", "idaci_rank", "geometry" ], "rows": 33, "table": false, "tojson": true }, { "name": "scotland_lip", "title": "Male lip cancer in Scottish counties, 1975-1980", "object": "scotland_lip", "class": [ "sf", "data.frame" ], "fields": [ "county", "cases", "expected", "aff", "geometry", "sir" ], "rows": 56, "table": false, "tojson": true }, { "name": "tef", "title": "Teacher effectiveness survey summaries", "object": "tef", "class": [ "data.frame" ], "fields": [ "Number", "Response", "Rate", "Mean", "STD", "BM_mean", "BM_STD", "Population", "Std.Error", "Zscore", "Normal" ], "rows": 37, "table": true, "tojson": true } ], "_help": [ { "page": "cattle", "title": "Cattle bodyweight data", "topics": [ "cattle" ] }, { "page": "cd4", "title": "CD4+ cell counts in HIV seroconverters", "topics": [ "cd4" ] }, { "page": "cov_structure", "title": "Build a within- or between-subject covariance matrix", "topics": [ "cov_structure" ] }, { "page": "emp_variogram_mc", "title": "Monte Carlo envelope test for spatial correlation", "topics": [ "emp_variogram_mc" ] }, { "page": "fev1", "title": "Lung function growth in Topeka schoolgirls (FEV1)", "topics": [ "fev1" ] }, { "page": "galicia", "title": "Lead concentration in moss samples, Galicia", "topics": [ "galicia" ] }, { "page": "galicia_grid", "title": "Prediction grid for Galicia", "topics": [ "galicia_grid" ] }, { "page": "galicia_pred", "title": "Covariate surface for Galicia prediction", "topics": [ "galicia_pred" ] }, { "page": "gm_grid", "title": "Prediction grid for Greater Manchester", "topics": [ "gm_grid" ] }, { "page": "gm_no2", "title": "Nitrogen dioxide in Greater Manchester", "topics": [ "gm_no2" ] }, { "page": "ichs", "title": "Indonesian Children's Health Study (ICHS)", "topics": [ "ichs" ] }, { "page": "liberia", "title": "Malaria incidence and child growth in Liberia", "topics": [ "liberia" ] }, { "page": "liberia_grid", "title": "Prediction grid for Liberia", "topics": [ "liberia_grid" ] }, { "page": "loaloa", "title": "Loa loa prevalence in Cameroon and Nigeria", "topics": [ "loaloa" ] }, { "page": "nw_obesity", "title": "Childhood obesity and deprivation in North West England", "topics": [ "nw_obesity" ] }, { "page": "run_app", "title": "Launch a course Shiny application", "topics": [ "run_app" ] }, { "page": "scotland_lip", "title": "Male lip cancer in Scottish counties, 1975-1980", "topics": [ "scotland_lip" ] }, { "page": "sir", "title": "Standardised incidence ratio", "topics": [ "sir" ] }, { "page": "spaghetti_plot", "title": "Spaghetti plot for longitudinal data", "topics": [ "spaghetti_plot" ] }, { "page": "tef", "title": "Teacher effectiveness survey summaries", "topics": [ "tef" ] } ], "_readme": "https://github.com/olatunjijohnson/lsda/raw/HEAD/README.md", "_rundeps": [], "_score": 2, "_indexed": true, "_nocasepkg": "lsda", "_universes": [ "olatunjijohnson" ], "_previous": "0.1.0", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.0", "date": "2026-09-30T07:38:33.000Z", "distro": "resolute", "commit": "33ac5ded60d7598854f0bd5969362bba94555b1c", "fileid": "https://r2.ropensci.org/13fc2c159bd56d99e1990f2c6cc13661358f81493ab16cdeede78854994e112b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/olatunjijohnson/actions/runs/36684215744" }, { "r": "4.6.1", "os": "linux", "version": "0.2.0", "date": "2026-09-30T07:38:51.000Z", "distro": "resolute", "commit": "33ac5ded60d7598854f0bd5969362bba94555b1c", "fileid": "https://r2.ropensci.org/3047fcbe814a1cad076f587afdb470da739d2d639a5e7a3b2716cbb4999aba95", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/olatunjijohnson/actions/runs/36684215744" }, { "r": "4.5.3", "os": "mac", "version": "0.2.0", "date": "2026-09-30T08:03:47.000Z", "commit": "33ac5ded60d7598854f0bd5969362bba94555b1c", "fileid": "https://r2.ropensci.org/d1e48f37d68703a575066e592c72843c98b0dfb337e312771cbda4bbaddf51a9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/olatunjijohnson/actions/runs/36684215744" }, { "r": "4.6.1", "os": "mac", "version": "0.2.0", "date": "2026-09-30T08:01:49.000Z", "commit": "33ac5ded60d7598854f0bd5969362bba94555b1c", "fileid": "https://r2.ropensci.org/7322f7205fc251af9c343e77666204eadcb6184d82dac13f4960eceb58ff5ffd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/olatunjijohnson/actions/runs/36684215744" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.0", "date": "2026-09-30T07:38:51.000Z", "commit": "33ac5ded60d7598854f0bd5969362bba94555b1c", "fileid": "https://r2.ropensci.org/e9b351291c9dd3c51743810d5bfb897641c94ce87ebbf1dfe956f8c79d0cb263", "status": "success", "buildurl": "https://github.com/r-universe/olatunjijohnson/actions/runs/36684215744" }, { "r": "4.7.0", "os": "win", "version": "0.2.0", "date": "2026-09-30T07:37:33.000Z", "commit": "33ac5ded60d7598854f0bd5969362bba94555b1c", "fileid": "https://r2.ropensci.org/eec6e5add0233405a0f9653ad3a0a7d624d1080c4c6cc81849dfe774858c681f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/olatunjijohnson/actions/runs/36684215744" }, { "r": "4.5.3", "os": "win", "version": "0.2.0", "date": "2026-09-30T07:37:19.000Z", "commit": "33ac5ded60d7598854f0bd5969362bba94555b1c", "fileid": "https://r2.ropensci.org/b59683c65db51f8994d1abca9a34ea320f65282ea52ab3352ae03705e3143507", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/olatunjijohnson/actions/runs/36684215744" }, { "r": "4.6.1", "os": "win", "version": "0.2.0", "date": "2026-09-30T07:37:35.000Z", "commit": "33ac5ded60d7598854f0bd5969362bba94555b1c", "fileid": "https://r2.ropensci.org/daa474c12d9c8bd72606116eb4db1cf444af835062e163c9718bded087f34bad", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/olatunjijohnson/actions/runs/36684215744" } ] }